PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG302700.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 389aa    MW: 41139 Da    PI: 4.8142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG302700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11323368555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR++i +++ +L+el+P++      + +Ka++L + ++Y+k Lq
  Pavir.1NG302700.3.p 323 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 368
                          99***********************7.....59*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.58E-13316372No hitNo description
SuperFamilySSF474592.49E-16316377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-15320373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGGFVDPFIP APAWPQDLVF TGSSWSDSAS APLADSAGTY MGAAPDQDTK FHLQNGSSPV  60
LFNGSAKEMV PPVELHEQFL QAQLQDDVTQ GLNFEMDGAL MASTLGSVLS TPCAISLADS  120
APVVCSSNDS SGSEQSGLPQ FILGEQPVPV SPAWPSTFTQ ISSLVGEETS QGFGFGTLSN  180
GDLLREACAA DAKKYPQLGN VPSVPLQLHS DAEFNTGKML SFAPGPRQQN TNFEDLQISQ  240
KEFSGLHHLN LSSLVSGQLS SFNATGVAHN PKQSNEASGG KNGLNAAPLM ARSEVPNGSG  300
IAGNNGAPKP RVRARRGQAT DPHSIAERLR REKISDRMKN LQELVPNSNR TDKASMLDEI  360
IDYVKFLQLQ VKVCSSPPPL YSMLSGLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749563e-65EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0PREDICTED: uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.19e-36LJRHL1-like 3